To assess the gene inventories in the genome assemblies, CEGMA analyses were done to identify 248 low-copy, core eukaryotic genes.
To estimate the completion and redundancy of metagenomic bins, anvi'o used PRODIGAL56 v2.6.2 to identify open reading frames in our contigs, and HMMER57 v3.1b2 to search for their occurrence in two collections of single-copy core genes for bacteria58 and archaea59.
"We strongly believe that Google developed Android by illegally copying core Java technology to rush into the mobile device market," Oracle's general counsel Dorian Daley said in a statement.
"We strongly believe that Google developed Android by illegally copying core Java technology to rush into the mobile device market," Oracle General Counsel Dorian Daley said in a statement.
It is thought that a single-copy core RNA polymerase complex consisting of α2ββ'ω subunits transcribes the same DNA [3].
It is generally believed that in Eubacteria key stages in RNA synthesis are carried out by a single-copy core RNA polymerase complex.
This gene has been used to estimate the number of bacterial genotypes in metagenomic libraries because it is a well-conserved, known single-copy, core metabolic gene [21].
For the supermatrix method, single copy core sequences were extracted from the set of homologous clusters.
Only single copy core genes were used (i.e. clusters containing paralogs were excluded).
This set of 497 single-copy core genes were identified as putative orthologous genes.
