Sentence examples for copies by comparing from inspiring English sources

This program identifies TE copies by comparing the genomic sequences with sequences present in a previously described TE library (RepBase 16.12: http://www.girinst.org/Rpbase-Update.html) [ 47].

The Ct values of samples could then easily be converted to the number of DNA copies by comparing Ct for the sample to the Ct for the respective standard plasmid of known concentrations.

In this study, we used the predetermined cut-off value for the significant copy changes by comparing the level of genetic changes using normal tissue DNAs including placenta, lymphocyte and gastric tissues in the previous study [ 32].

Since nDNA replication is also extensively affected in dpb4Δ mutant microarray data, we also normalized the mtDNA copy number by comparing the mtDNA Ct of dpb4Δ with nDNA Ct of WT cells.

The number of gene and transcript copies was calculated by comparing the amplification result (Cp) to that of a dilution series of plasmids containing mcrA or dsrB genes ranging from 0 to 10 gene copies per reaction as described in Nyyssönen et al. [ 3].

This program identifies copies of TEs by comparing genome sequences with sequences present in a previously described library of TEs (RepBase 16.12: http://www.girinst.org/repbase/update/index.html) [ 55].

We determined potential somatic copy number variations by comparing each tumor focus with the matched benign tissue (Additional file 1, Figure S6).

The relative comparative threshold cycle (2-≥≥CT) method was used to quantify copy number changes by comparing the ΔCt [cycle threshold (Ct) of target region minus Ct of control region] value of samples to be tested to the ΔCt of a calibrator without CNV [ 69, 70].

To determine the relationship between gene copy number alteration and expression, correlation analysis was performed for gained genes by comparing copy number amplified/gained cases vs. copy number neutral/lost cases.

To determine the relationship between gene copy number alteration and expression, correlation analysis was performed for amplified genes by comparing copy number amplified/gained cases vs. copy number neutral/lost cases.

For genome-independent discovery 70-mers were extracted from the sequence of the control individual and single-copy sequence was identified by comparing the 70-mers across samples to evaluate copy number and variation.