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In our analysis, the initial radius of the distance used to build the virtual grid of coordinates was set in 10 Å. Herewith, 4535 and 14,702 virtual coordinates of reference were created into the protein structures of 2O3P and 1E8W respectively (see an example in the Table 2).
To allow the assignment of individuals sharing the same nest to a different cluster, the 'uncertainty of coordinates' was set to 20, as neighbouring nests are often within a distance range of 20 m.
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3D coordinates were set up for each subject, and cephalometric landmarks were designated.
Then, two local coordinates are set up for any layer according to the newly developed reverberation matrix method.
For this study, the Vernalis dataset was provided such that all atom coordinates were set to zero.
Note that the maximum value of the horizontal coordinates is set to be 14 due to the fact that all the models are failed when the modifying horizon is longer than 14 hours.
In this experiment, maximum number of touch coordinates is set 10. Thus, in the classifier "Touch distinction by the SVM model" (1), N will be (t times r = 10 times 20 = 200).
The individual cell migration traces in Fig. 2C are from neutrophils whose starting coordinates were set to the same origin at t = 0 and were then tracked over time after synthetic activation of either endogenous PI3K (left) or endogenous Rac (right).
For the ATNx2 group, the dorsal ventral coordinates were set at −7.1 (medial) and −6.4 (lateral) from bregma.
For the convenience of visualization, two sets of Cartesian coordinates are set with X- and X'-axes intersecting the axes of Hole #1 and Hole #2, respectively.
The rostrocaudal (+ 0.6 mm; −1.4 mm) and mediolateral (largest extension 0.76 1.78 mm) coordinates were set with reference to Bregma and were consistent between mice (Fig. 1a).
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