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We used the gene coordinates retrieved from Ensembl using the BioMart tool.
The case farms were geo-referenced with coordinates retrieved from phone directories of Norway and Sweden (www.gulesider.no; www.gulesider.no www.eniro.se).
Location of herds was based on geographical coordinates retrieved from the database of the Swedish Board of Agriculture.
The mapping between microRNAs and its host genes was completed using a simple method that utilizes genomic coordinates retrieved from miRBase [ 23].
From the mapping coordinates retrieved from the NCBI STS map we estimated the deletion to have an extent of approximately 9.2 to 14.4 Mbp (7p13 14.3).
It is also used as a persistent cache for some shared data, like the library of splice junction coordinates retrieved from the annotation.
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CUT and SUT coordinates were retrieved from Xu et al. (2009), while XUT coordinates were from van Dijk et al. (2011).
Maestro preparation scheme: For each crystal structure the coordinates were retrieved from the Protein Data Bank (PDB) in our dataset.
Standard settings of the Gold v4.1 program [93] were used to dock staurosporine to the ATP-binding site of bovine synapsin (PDB entry 1aux) whose coordinates were retrieved from the sc-PDB databank [30].
The genomic coding coordinates were retrieved from Ensembl biomart and UCSC table browser.
Boundary element sequence coordinates were retrieved from available literature [ 46, 58].
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