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Coordinates of foci of GM changes within each suprathreshold cluster were produced as MNI coordinates.
The pose is determined by the 3D coordinates of the focus (X-ray source) and the Euler angles of the fluoroscopic image plane, which are both expressed in the frame of reference of the CT volume (see Figure 3).
Spindle length was determined by measuring the x-y-z coordinates of in-focus SPBs with ImageJ.
The initial step of ALE is to generate a Gaussian probability distribution around the peak or central coordinates of significant foci reported in voxel-based studies.
Coordinates of the foci reported in the original studies were transformed into the MNI space using the Lancaster transform (icbm2tal tool) in GingerALE.
Out of the 42 fMRI studies, 5 were excluded because they did not provide coordinates of activation foci; out of the 15 papers on sMRI studies, 6 papers were excluded for the same reason and one paper was excluded because it did not include expert meditators.
Notice that if you are working with a parabola with a vertical axis of symmetry, the x-coordinate of the focus is the same as the x-coordinate of the vertex.
A meta-analytic approach, which models the probability distributions centered at the coordinates of each activation focus, allows obtaining a general picture of functional neural modifications in meditators.
The method presents satisfactory results in the computation of Euler angles and of focus coordinates parallel to the radiographic plane.
These regions were selected by taking the coordinates of each true foci and then randomly perturbing the coordinates to find a region nearby (within 10 pixels) which did not overlap with any of the true foci locations.
It can provide three-dimensional coordinates of specific cancer foci.
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