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Let p q,x,p q,y,p q,z denote the x,y,z coordinates of elements in the q th sub-array, q = 1,2.
During simulations intervals of one set corresponded to genome coordinates of elements (e.g. CGIs) and the other set contained intervals with lengths corresponding to those of the second set of genome elements but located at random positions in the chromosome.
Similar(58)
The coordinates of Alu elements and other transposable elements in the human genome were extracted from the file chromOut.zip, which was downloaded from [ 52].
The genomic coordinates of repetitive elements were used to build repetitive element psuedogenome assemblies for each distinct repetitive element subfamilies.
Elements were then collected using the coordinates of the elements to which 500 bp of downstream and upstream sequences were added.
The pores having concave and convex walls were represented as an assemblage of spherical elements since any pore could be described merely by listing the radii and coordinates of the elements.
In this study, a uniform linear microphone array is assumed, where the coordinates of the elements are denoted by (see Figure 3) and is the number of microphones.
Core domains (nucleic coordinates of known elements) were identified through BLASTN alignments against TREPnr.
RepeatMasker tables at the UCSC Genome Browser (hg18) were utilized to map the coordinates of transposable elements into the genomic region of X chromosome.
The simulator was built such that differential enrichment profiles could be generated by defining the coordinates of repetitive elements, or other genomic features.
To facilitate the derivation of non-singular expressions, an integration method based on the vertexes' coordinates of the element is applied to the singular integrals.
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