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All scale conversions for the work were done using ImageMagick's convert function.
The ID convert function can convert the gene IDs between the new and old version.
The 14 random rat genome regions were then entered into the UCSC genome browser, and the human orthologous regions were determined using the 'in other genomes (convert)' function, as described above [ 24].
Human orthologous regions of rat regions that associate with mammary cancer susceptibility listed in Table 1 were determined using the 'In other genomes (convert)' function available at the University of California Santa Cruz (UCSC) genome browser [ 24].
Use the Convert function.
It also has convert function.
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EPI and T1 images were reconstructed offline into NIFTI format (Mayo Foundation, Rochester, MN, USA) using DICOM convert functions available in SPM5 (Statistical Parametric Mapping: The Wellcome Department of Cognitive Neurology and collaborators, Institute of Neurology, London) running in Matlab (The MathWorks, Natick, MA, USA).
Owing to erroneous ultra-long reads for XD4, reads >60 kb and <1 kb were discarded from this corrected pool using a custom python script in combination with samtools (www.samtools.sourceforge.net), bedtools (www.bedtools.readthedocs.io), last (maf-convert function, www.last.cbrc.jp) and the fastx-toolkit (www.hannonlab.cshl.edu).edu
A WENO re-averaging (or re-mapping) technique is developed that converts function averages on one grid to another grid to high order.
Supposing converting function follows the linear law, ( mwr_{ij}^ = k times mwr_{ij} + b ).
A series of coefficients was introduced in the converting and clustering calculation, such as ( k ) and ( b ) in converting function ( mwr_{ij}^ = k times mwr_{ij} + b ), ( p_k ) in Eq. (4), ( p_k ) and ( p_pri ) in Eq. (5).
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