Contradictory assignments were resolved manually.
In some cases, the PSMs contain contradictory assignments of different peptides by different algorithms to the same spectrum.
If the state change node can be reached by paths making contradictory polarity assignments, it is assigned a polarity of "ambiguous".
Because we lack any relevant evidence, the available evidence doesn't seem to favor the coarser possibilities over the finer subpossibilities, leading to contradictory probability assignments.
Consistent with prior studies, the morphology-based polar body assignment was contradictory with the heterozygosity-based assignment in 15 of 35 (43%) of cases and the polar bodies were reassigned accordingly.
For example, a given cluster can be assigned to level 1 only, when the taxonomy only agrees at the level of domain Eukarya (i.e. phylum-level assignments are contradictory).
The contradictory statements over Mr. Davis's assignment are just part of the evidence that Pakistani news accounts have cited in criticizing the United States' position.
If the taxonomic information is limited or contradictory, taxator and binner assign identifiers to higher ranking taxa in a conservative fashion to obtain the most reliable taxonomic assignments.
Another mapped locus (CHL2) with contradictory mapping information and a questionable gene assignment was also removed.
This method is clearly complete: If the original formula is satisfiable then we will eventually find one such satisfying assignment; but if the formula is contradictory (i.e. non-satisfiable), we will be able to determine this too.
