The topic segmentation method introduced by Utiyama and Isahara [28] for textual documents was chosen in the context of transcript-based TV program segmentation for two main reasons.
Parameters such as the p-value, fold change and genomic context of transcripts that were used successfully in the previous predictor were again incorporated into the linear model.
Quotes are then recontextualized into the broader data set to make sure observations agree with the overall context and content of transcripts [ 43].
This process allowed us to become thoroughly immersed in the data within the context of each transcript in its entirety, and we were able to compare the data from the transcript under discussion with the data from other analyzed transcripts.
Transcript 5′- and 3′-boundary positions were obtained from table S4 of Nagalakshmi et al. (2008) and the positions of ORFs annotated as coding by SGD were noted within the context of the transcript.
The expression changes for Nfib and Nr3c1 transcripts in their respective KO (marked by an asterisk) occurs in the context of the transcripts lacking an essential exon and thus no functional protein is expressed.
Candidate STEPs alleles were systematically submitted in the sequence context of their transcript-intron to a series of online splicing prediction algorithms to generate an in silico prediction of splicing efficiency via recognition of the 3' and 5' splice sites (Figure 3).
These results show that ion-dependent RTS can detect and map RNA G4s in the context of extended transcripts.
In the context of abundant transcripts, the post blood meal digestion midgut infected with L. infantum chagasi is relatively quiescent.
Our work identified 17,001 TSS that we grouped into six categories based on the genomic context of their transcripts: mRNA (4,430 TSS assigned to 2,657 protein-coding genes), leaderless mRNAs (171), putative mRNAs (425), internal sense transcripts (7,650), antisense RNA (3,720), and trans-encoded sRNAs (605).
Such loaded expressions look much more innocent in the context of the full transcript, Ms Hudson decided.
