Sentence examples for contents of insertions from inspiring English sources

As short insertions are likely to be fully contained in several reads, mapping donor reads to a reference genome enables simultaneous discovery of the sites and contents of insertions (Albers et al., 2011; DePristo et al., 2011; Li et al., 2009; Ye et al., 2009).

Transposon insertions were randomly distributed throughout the M. loti genome without any bias toward G+C contents of insertion target sites and transposon plasmids used for the mutagenesis.

Deletions and substitutions, apparently recognized by analyzing the length and contents of insertion based on string comparison, can be considered as the insertion in different forms.

SRiC pinpoints exact SV breakpoints, reveals the sequence content of insertions, and covers the whole size spectrum for deletions.

Compared with the existing read-depth and read-pair approaches for SV identification, our method can pinpoint the exact breakpoints of SV events, reveal the actual sequence content of insertions, and cover the whole size spectrum for deletions.

Compared with the existing read-depth and read-pair analyses, our sequence-based method can pinpoint the exact breakpoints of indel/SV events, reveal the actual sequence content of insertions, and cover the whole size spectrum for deletions.

Moreover, SV detection approaches described above (e.g. array/read-pair/read-depth based methods) cannot accurately locate the breakpoints of the SV events, nor can they reveal the actual sequence content of insertions.

Compared with the read-depth and the read-pair analyses, our sequence-based method can not only pinpoint the breakpoints of SV events, but also reveal the actual sequence content of insertions.

Statistical analysis by Mann-Whitney test on the difference of the average T content of insertion sites for E. histolytica and E. dispar suggested that there is no significant difference between the two.

In order to examine the target site preference of Cassandra elements, the GC content of Cassandra insertion sites was analyzed, including the 5-bp TSD sequence and two 20-bp flanking sequences of 1,175 PbrCassandra, 188 MdCassandra, 194 PpCassandra, 69 PmCassandra, and 36 FvCassandra intact copies with TSDs (fig. 3 A).

Finally, the difference between GC3 and noncoding GC-content might be the consequence of insertions and deletions (indels), which affect noncoding DNA but are strongly counterselected in CDS.