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The result is a content matrix of fourteen columns.
Enrichment for gene families was found using the gene content matrix described above, combined with previous knowledge of the isolates.
The model for the genomic genetic effect is as follows where M is the gene content matrix.
The resulting orthologous groups were used to construct a whole-genome network using the Neighbor-Net algorithm based on a gene content matrix.
Removal of genes related to mobile genetic elements (34% of accessory genes) from the gene content matrix resulted in a topology very similar to the core-genome tree.
In addition to this phylogeny based on the core genome, we constructed a tree based on the pan-genome as follows: a gene content matrix consisting of 1 s and 0 s was constructed where the columns correspond to the different strains and the rows to different gene families.
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From these breed-specific allele content matrices, marker-based breed-specific partial relationship matrices are constructed and these are as in the " Methods" section.
On the other hand, a user-content matrix update approach was proposed in article [12], which updates and fills in cold user-video entries to provide the foundations for the recommendation.
Cell viability, cell morphology and DNA content, extracellular matrix production and expression of genes related to NC markers (Brachyury, KRT18) and NP matrix production (ACAN, COL2A1, COL1A1) were assessed after 1, 15 and 28 days of culture.
However, further increasing collagen content altered matrix organization with a subsequent decrease in the failure strain.
Microstructure investigation on the component level revealed that RCF size and content modify matrix toughness and fiber/matrix interface properties.
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