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The mean annual proportion of detected Salmonella contaminated samples from all imported shiploads was 34.3% with a range from 11.5 to 62.3%.
The sensitivity of both the correlation and concordance measures is much lower, making it difficult to distinguish contaminated samples from the ideal experiment.
A total of 1,391 patients were enrolled, with complete test results available for 952 patients (68.4%) after excluding contaminated samples from 150 patients (10.8%), and 289 patients (20.8%) who did not have a chest radiograph taken.
The proportions of salmonella contaminated samples from feed mills from A and B before and after heat treatment (87%; Table 1 and 86%; Table 2 respectively), were larger than expected by their market share (75%), during all the ten years studied.
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CSF was visually inspected for the presence of blood contamination and contaminated samples were excluded from further analysis (5 CSF samples from LC-MS/MS analysis and 4 samples from WB analysis) leaving samples from 27 animals for LC-MS/MS analysis and 36 animals for WB analysis.
Brains were removed after in situ perfusion with PBS (pH 7.4 at room temperature) at 1 2 ml/min for 4 5 min. CSF and brain samples were visually inspected for blood contamination and contaminated samples were excluded from exposure analysis and analysis of amyloid-β in CSF.
The contaminated samples were from seven products that had already been withdrawn, including Findus lasagne and Tesco burgers.
The contaminated samples were from four of the 15 vegetable types (27%%).
In 2004 54% of the investigated consignments were imported by Company A and contained 90% (p < 0.0001) of the salmonella contaminated samples taken from the vegetable proteins imported, and 71% of the serovars (p < 0.01).
An injector program was used to minimize potential cross-contamination from heavily contaminated samples as far as possible.
In Selaginellaceae, contamination by algal sequences was observed in a significant number of samples (7/16 samples for trnH-psbA); contaminated samples were removed from the analysis.
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