Sentence examples for containing the alignment from inspiring English sources

The main filter uses a precomputed table containing the alignment score of short four base words aligned against each other.

Fasta files containing the alignment labeled with the SSU and LSU rRNA secondary structure are included in the digital supplementary material associated with this article (additional file 2).

A hit table was produced containing the alignment of each reference STAR locus with its position in the target genome, % identity match and bit score.

Return values: FLCS returns a hash corresponding to the alignment between X and Y: my %alignment = (    distance => 0, X =X => "",    Y => ""); where: distance: is a scalar containing the Levenshtein Distance between strings X and Y, computed using only fragments; X: is a scalar containing the alignment string X; Y: is a scalar containing the alignment string Y.

Each gene was added to its corresponding Se-Al v2.0a11 http://evolve.zoo.ox.ac.uk file containing the alignment of multiple homologous gastropods sequences and the gene was demarcated on the genome based on the results of the alignment.

Mauve provides a backbone file containing synteny blocks and an alignment file containing the alignments of each synteny block.

Files containing the alignments of both the mitochondrial and nuclear datasets can be accessed in the Dryad Digital Repository under doi 10.5061/dryad.8962.8962

The microRNA.org database contains the alignment and score of sequences from miRBase mapped to various genomes (e.g. human, mouse, drosophila).

Similarly, Ensemble's MotifFeatures.gff table contains the alignment information for the TFBS element matrix documented in JASPAR [by MOODS software (42)] for human and mouse.

For SNVs and indels, ClinSeK outputs a reduced BAM file which contains the alignment of reads to the target sites and a VCF file which contains the list of variants at the target sites and their characteristics.

The LF for each pathogen analysed, coming from the output file after the BLASTP analysis [18], which contains the alignments comprising local, significant sequence similarity between the pathogen query protein and a subject human one, have been carefully scrutinised.