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CTL responses were identified against three epitopes, containing positions E98D and R184K (Table 3).
The recA- and mutS- gene containing positions were identified as natural transformation and certainly homologous recombination "hot spots" (see below).
The minimum length for conserved blocks was set to five residues, while we decided to keep gap containing positions if the gap was present in 50% of the sequences examined.
Supplementary file 4. Bed file containing positions and sequences of the consensus motif in hg18 assembly of human genome.
The first one, containing positions 12, 14, 19 (T1 in blue on Figure 7A, numbered in Table 2), has a site volume of 103 Å and is common for patients treated and untreated patients.
A whole genome alignment was constructed containing positions shared by these ten highly syntenic S. islandicus genomes and the outgroup genome of S. solfataricus P2 (She et al. 2001).
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PCR fragments containing position g.66012 were digested with restriction enzyme DraIII (New England BstNI New England MA, USA).
Optimal feature set was selected from candidate features, containing Position Specific Scoring Matrix (PSSM) conservation score features and secondary structure features.
Halvade iterates over the SAM records and creates a BED file (Quinlan and Hall, 2010) containing position intervals that cover all SAM records in the chromosomal region.
This ETF's basket contains positions in light crude (38%), heating oil (17%), gold (14%), aluminum (11%), wheat (11%) and corn (9%).
Their control region haplotypes contain positions 16519C and 263G (Table S4).
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