Sentence examples for contained within the alignment from inspiring English sources
That is, they are not contained within the alignment of either side of the read to the reference genome.
The unique mapping reads contained within the alignment file (BAM) were sorted and tested for overlap to mm9 RepeatMasker (www.repeatmasker.org/) annotated repetitive elements.
These single-sequence query methods do not, however, take full advantage of the information contained within the query alignment.
AlignView shows an alignment between (i) the genes contained within the genomic region of the reference gene and (ii) all their respective orthologs in other species.
Using this phylogeny, we explicitly tested the accuracy of current taxonomic alignments and the phylogenetic signals contained within the O and H antigenic data.
In contrast, sequence alignment revealed only 40% homology in the residues contained within the hydrophobic binding site from W623 to Y657 in Stat3 and the corresponding region of Stat1 (Figure 3G).
Sequences of 51 full-length P2X receptors were aligned using ClustalW (EBI) to obtain an optimal alignment within the boundaries of the zfP2X4.1 sequence contained within the crystal structure.
However, because of the complex, pretzel-like structure of the NMJ, total area contained within the outside boundary does not accurately reflect the "synaptic area" of pre- and post-synaptic alignment where intercellular communication occurs.
Here, we address this problem by showing that RNA alignment can be generally modulated, in a controlled manner, by variable elongation of A-form helices and that the information contained within the measured RDCs can be extracted even in the presence of strong couplings between motions and overall alignment via structure-based prediction of alignment.
The level to which each contig accurately represents the information contained within the original genomes was assessed using a contig accuracy score, defined as the identity of the local alignment multiplied by the ratio of alignment length to contig length.
The multiple sequence alignment also indicated that the SmVAL family could be divided into two groups based on features contained within the SCP/TAPS domain.
