Then we pooled together data from different networks, and built one 2×2 table for each genus: rows contained the count of modules that followed our prediction and the count of modules that did not; columns contained observed and expected values (equal proportions).
Mutual Information was calculated using the formula where entropies H were obtained from the contingency table that contained the counts of GO terms for genes in clusters.
MI(C, A) was calculated from the contingency table that contained the counts of 333 GO terms for genes in 148 larger clusters with at least 10 genes (305 GO terms and 471 clusters, respectively, for k-means clustering).
This database contains the count of properties in England and Wales for several build periods and housing types [49].
This means that, at the end of the Stage 1 processing, and mc will contain the count of the number of pixel locations which are contained within Q1_WNES.
Table 2 contains the counts for all of the cell type expression annotations.
The directories labeled C10 are the files that contain the counts of oligonucleotides with at least ten occurrences in genome.
Workbooks 9, 11 contain the counts of reads aligned to each Ensembl gene, for lung and hippocampus.
Each csv contains the counts for each EB and object sampled at the P-system EB level referred in the file name.
Next, two matrixes were generated, one containing the counts of RNA-seq fragments and used for differential expression by DESeq and the other one performing the TMM normalization in order to generate graphics.
