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Our final sample thus contained published reports of 137 interventions from 133 trials.
Our dataset contained published RPB1 and RPB2 protein sequences (1936 amino acids, aligned) and nuclear large and small subunit rRNA gene sequences (3435 nucleotides) from 69 species, including 42 fungi, 17 plants, and 10 other eukaryotes (Additional file 1).
Most of the documents reviewed, e.g. [ 20, 21] contained published general figures on solid fuel usage in reference to the total energy consumption, not on the number of households using specific solid fuels or the characteristics of those who use solid fuels.
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This dataset contains published data on target, essentiality, links to PubMed, TBDB, TBCyc (which provides a pathway-based visualization of the entire cellular biochemical network) and human homolog information.
We compiled FASTA files containing published protein sequences from N. vectensis for bHLH-PAS genes, deiodinases, Fox genes, LIM homeodomains, minicollagens, nuclear receptors, Sox genes, and Wnts.
The Excel files contain published and unpublished raw data, as well as a data dictionary where acronyms and terms are defined, as well as a set of published methods detailing how the study was performed.
Interestingly, according to the interrogation of a database that contains published epitopes (http://www.iedb.org/; our last query = 5/23/14), none of the above indicated proteins have been previously reported as immunogenic/antigenic with the exception of Rv2241.
There are limitations associated with using data sets containing published genomes from multiple studies, such as the lack of control on sampling and isolate information, but these genomes, principally from clinical isolates, are from diverse lineages (Miragaia et al. 2007).
Therefore, the systematic literature review contained articles published between 1984 and 2014.
We attempted to contact the authors of included studies and requested further information not contained in published articles.
We attempted to contact the authors of included studies and requested additional information not contained in published articles.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com