Cornell's software can directly call Southampton citation analysis code, to analyze the references contained in the Reference section of an online document.
Class codes described by Cuffcompare: "=" Exactly equal to the reference annotation, "c " Contained in the reference, annotation, "e" possible pre-mRNA molecule, "i " An exon falling into a intron of the reference, "j " New isoforms, "o" Unknown, generic overlap with reference, "p" Possible polymerase run-on fragment, "u" Unknown, intergenic transcript.
In this file, sequences that are not adjacent in the reference genome are reported; these are defined as "junctions", consisting of a "left arm" reference sequence, a breakpoint with an optional transition sequence (a stretch of sequence that is not contained in the reference genome) and a "right arm" reference sequence at a non-adjacent genome location.
Bene argues that quantum states are relative in the sense that they express a relation between a system to be described and a different system, containing the former as a subsystem and acting for it as a quantum reference system (here the system is contained in the reference system, while in Breuer's work the system contains the apparatus).
Since these phenomena are described using biomedical reference ontologies, inferences can take the information contained in these reference ontologies into account to perform queries across multiple connected domains as well as distributed knowledge bases.
Choosing a Research Topic on America's Civil Rights and Social Movements — A list of reference books (e.g., The Encyclopedia of Civil Rights in America) contained in the reference areas of various UC Berkeley libraries (mostly Doe and Moffitt).
The role of the silver/silver chloride system contained in the reference membrane was investigated by removing the silver chloride and silver ion from the thermo-MMA:nBA reference membranes.
Moreover, the synthesis of new grasps, not contained in the reference set of hand postures, has also been achieved by means of the synergy subspace.
The rare type match problem is an evaluative challenging situation in which the analysis of a DNA profile reveals the presence of (at least) one allele which is not contained in the reference database.
