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Although five supergroups of eukaryotes contain sequenced representatives with PARP genes in their genomes some lineages appear to have lost all PARP homologues; i.e. in sequenced diatoms, brown algae, red algae, subset of green algae and Excavata group Diplomonads, PARP homologues were not previously identified [9].
Both types of libraries contain sequenced genomic fragments that are effectively randomly distributed throughout the genome; however, they differ in being comprised of actively transcribed components only in the case of EST libraries versus random genomic fragments in the case of BAC libraries.
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It is estimated that 3% of ESTs contain sequencing errors.
If the reads contain sequencing errors, this calculation requires modification.
FASTQ sequence files were obtained containing sequenced reads for each sample (Fig. S1).
The sequence in BA000029.3 is thought to contain sequencing errors.
Thus, BA000029.3 is considered to contain sequencing errors.
About 4.5% (263) of all ScCOGs contain sequences from each of these organisms.
Conversely, individual mRNAs may contain sequences complementary to multiple miRNA family members [3], [4].
Both clusters contain sequences from cercopithecoids and from hominoids.
Moreover, PFAM clusters contain sequences from bacteria, animals and plants.
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