We've contacted Benchmark for confirmation of the raise and will update if we hear back.
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To prevent proximity in sequence from biasing results, only positions 10 or more apart in sequence are considered when using contact as a benchmark.
The method was assessed on its ability to reproduce the native contacts in five benchmark cases with simulated MS data and two cases with real MS data.
Our experiments using real-world datasets illustrate that SoWatch outperforms a benchmark contact-based watchdog system in terms of detection time by 45% and detection ratio by 10% with less communication overhead.
Furthermore, the data about the number of contacts for the benchmark could be counted in different ways.
Of the seven benchmarks now being consulted on, three are linked to interest swaps - the so-called ISDA fix, and two rates known as Sonia and Ronia – while the others are gold, silver, the Brent oil futures contact and the currency benchmark known as WM which prices foreign exchange rates at 4pm London time.
To evaluate the usefulness of MetaPSICOV contacts in de novo protein structure prediction, we carried out a benchmark on contact-assisted fragment assembly using FRAGFOLD (Jones et al., 2005).
Survey data gathered from graduate tax program directors at 26 universities, a response rate of about 43% of all programs contacted, is used to benchmark characteristics and trends of U.S. programs awarding a Master of Science in Taxation (MST) degree.
Starting with randomly placed proteins, R osettaD ock predicts more than 50% of the interface contacts for 23 of 32 benchmark targets (49).
