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In this paper, we put forward certain principles in constructing a network with state stability.
The rationale for constructing a network with 2D topology is because when applying MFA, fluctuations are generally less important when nearest neighbor connectivity is greater.
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The human interaction network related to the 846 genes is extracted based on the interactions among these genes and constructed a network with 1,328 PPIs and 569 PDIs.
To summarize the results obtained from the full model (4), we constructed a network with a total of three Myb, five AFLP and two microsatellite markers significantly associated to the metabolites (P<0.05).
For the crotonase and GPCR superfamilies, the families of network topologies across a range of different E-value thresholds do not change substantially whether or not the domain-only sequence is used to construct a network with BLAST (data not shown).
We treat each TF as an attribute, and construct a network with the procedure described above.
It usually takes hours to construct a network with hundreds of nodes.
Here we combined the hypergeometric scoring with logistic regression to construct a network with less bias against membrane interactions.
We construct a network with the same structure on 35 nodes, and add in two extra unconnected nodes, giving a network on 37 nodes.
We first constructed a network with all interactions and organized it with the force-directed algorithm in Cytoscape [see Additional file 15].
The authors propose that by appropriately adjusting these parameters it is possible to construct a network with an arbitrary degree distribution.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com