Sentence examples for constructed with the program from inspiring English sources

The SP network was constructed with the program TCS v. 1.21 [42].

Phylogenetic networks were constructed with the program Network 4.5.0.0, using the median joining algorithm.

A consensus tree was constructed with the program consense, included in PHYLIP, using the extended majority rule criterion.

Homology models of VB1VB and VB1OE domains were constructed with the program MODELLER which implements an automated approach to comparative protein structure modeling by satisfaction of spatial restraints.

A homology model for EGS was constructed with the program Modeller [27] based on the structure of phenylcoumaran benzylic ether reductase (PCBER, PDB entry 1QYC [6]).

Bioclimatic niche models were constructed with the program Maxent 3.3.3 [ 101].

For this, protein sequences alignment was performed using the MUSCLE program [ 77], and maximum likelihood trees with 100 bootstrap replicates were constructed with the PHYML program [ 78, 79] and the JTT amino acid substitution model.

NJ tree was constructed with the MEGA4 program.

A UPGMA dendrogram was constructed with the NEIGHBOR program in the PHYLIP package v3.69 [82].

For the σ38 −10 element a new matrix was constructed with the WCONSENSUS program [39], utilizing the nucleotide sequences of 71 promoters of E. coli annotated in RegulonDB.

A rooted phylogenetic tree was constructed with the TreeView program [21], where the Physcomitrella patens PpMIRO2 was used as an outgroup.