Sentence examples for constructed using the program from inspiring English sources
Input files for various software were constructed using the program Create when possible [26].
Models based on each template were constructed using the program NEST [29].
Median joining networks were constructed using the program NETWORK, ver. 4.1.1.2 [66].
MJN of the S-gene quasispecies of HBV/E and HBV/A3 were constructed using the program NETWORK 4.0 [26].
The phylogenetic tree was constructed using the program protml.exe of the package Phylip v. 3.65 [56], [56].
One thousand bootstrap pseudo-datasets were constructed using the program seqboot, which was used as input into ProML that used a Hidden Markov Model method to infer evolutionary rates among residue positions [38] with the Jones, Talyor, and Thorton [39] probability matrix.
The JTT distance matrix of protein sequences was constructed using the PROTDIST program and the neighbour-joining phylogenetic tree was constructed using the NEIGHBOR program of the Phylip package [ 23].
Phylogenetic trees were constructed using the CLUSTAL_X program following alignment of sequences by neighbor-joining algorithms [ 28] and visualized using the TreeView program [ 24].
The maximum parsimony trees were constructed using the PROTPARS program.
Starting phylogenetic trees were constructed using the modified program BIONJ.
The phylogenetic tree was constructed using the MEGA5.05 program with the neighbor-joining method.
