Sentence examples for constructed from the alignment from inspiring English sources

A PWM was constructed from the alignment obtained with SeSiMCMC using the formula described in [ 56].

A phylogenetic tree was constructed from the alignment using Phylip algorithms [ 34].

A phylogenetic tree was constructed from the alignment of 54 representatives (Table S6) of different kingdoms of life.

Here we present amino acid substitution matrices constructed from the alignment of a large number of protein domain structures from the structural classification of proteins (SCOP) database.

This work also reports the categorization of sugarcane protein kinases based on neighbor-joining (NJ) trees constructed from the alignment of the predicted catalytic domain.

A profile HMM was constructed from the alignment by using the program HMMER software package [ 48], and used for gene prediction.

First, −35 and −10 elements were extracted from the input promoter sequences, aligned, and separate PSSMs constructed from the alignments with a pseudocount=1.

Evolutionary trees were constructed from the alignments using TreeView.

Plots were constructed from the alignments with the CPB on the y-axis of the plot.

Phylogenetic trees were constructed from the alignments using the program PAUP* [ 57] and these were displayed in TreeView [ 58].

The resulting nine TAR and ten YUC grapevine sequences were aligned to the respective protein families from Arabidopsis and unrooted phylogenetic trees were constructed from the alignments.