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Figure 4 Phylogenetic tree based on tuf gene sequences of ChIF phytoplasma and related 17 phytoplasmas, constructed by the maximum parsimony method.
An optimal policy constructed by the maximum expected utility principle is therefore a very risky bet, as a lot of resources have to be spent before any evidence exists that the underlying model or prior is adequate. .
An optimal policy constructed by the maximum expected utility principle is therefore a very risky bet, as a lot of resources have to be spent before any evidence exists that the underlying model or prior is adequate.
Estimates of the receive cone angles are achieved via eigendecomposition of R as R = UΛ U H (22). where Λ = diag[λ 1, λ 2, ⋯, λ P ] is constructed by the maximum P eigenvalue of R. The number of targets P should be estimated in advance.
Figure 2, constructed by the Maximum Likelihood method, shows that Colombian strains belong also to genotype V, and are closely related to Brazilian strains.
Figure 3 shows a phylogenetic tree constructed by the maximum likelihood method.
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Phylogenetic trees were constructed by the maximum-likelihood method with default parameters implemented in PHYLIP (v. 3.69) [ 60] and visualized using Dendroscope [ 61].
A phylogenetic tree was constructed by the maximum-likelihood method using the General Time Reversible (GTR) model with PhyML 3.0 [ 52].
Preliminary trees based on the complete sequence dataset for each enzyme were constructed by the approximately maximum likelihood approach with FastTree 2.1.3 [ 76] in order to classify sequences in functional classes with respect to well-characterized proteins (see additional file 1).
However, since the intervals are constructed to be symmetrical about the mean difference, and not symmetrical about 0, the TDI could be constructed by taking the maximum of the absolute value among lower and upper limits: max(| L low |, | L upp |).
The phylogenetic tree was constructed by using the maximum likelihood method, with general-time reversible model of substitution determined by Modeltest using PAUP* (7 ).
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