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OGC standard-compliant services such as WPS, WFS, and SOS, and local geoprocessing algorithms in GRASS can be viewed as fundamental blocks to construct workflows.
In addtion to the tab used to construct workflows, there is another tab to show the virtual globe in GeoJModelBuilder in the right panel. Figure 4 shows the virtual globe and the geoprocessing result loaded into the virtual globe.
The primary goal of Chipster's workflow functionality is to enable non-programming users to construct workflows.
In the context of image-based systems biology, the main advantage of KNIME is that it can construct workflows beyond the direct interoperability of available image analysis tools.
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The scripting approach follows a four-phase procedure: providing XML descriptions of hydrologic models in GRASS, constructing workflows of extracting drainage networks based on XML descriptions, exporting the workflow into a Python script, executing the script to get the final result.
For constructing workflows, PharmDB is provided in BioMart format (http://biomart.i-pharm.org/).org/
The constructed workflows are always designed to produce a minimum possible count of requests to the NCBI resources.
In Chipster we have taken an approach where, instead of specifically constructing workflows, the user performs the analysis normally.
All of the abovementioned systems have graphical user interfaces for constructing workflows and can run on HPC and cloud systems.
Previously constructed workflows were re-used for the analysis of QTL and gene expression data, to identify biological pathways which correlated with Trichuris muris infection.
The constructed workflow and analysis results are demonstrated in Fig. 6.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com