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PCR-based markers, including SSR markers (McCouch et al. 2002; Ware et al. 2002; http://www.gramene.org/) and cleaved amplified polymorphic sequence (CAPS) markers (Konieczny and Ausubel 1993), were used to construct linkage maps.
Fourteen LGs had sufficient MI-markers to construct linkage maps with MAPMAKER again giving higher values than JOINMAP, but now with only 17% difference.
Haploview (version 4.2) was used to construct linkage disequilibrium (LD) plots displaying r2 between each genotyped variant in a locus (Supporting Information S1).
We used the CRI-MAP software package to construct linkage maps [ 6].
JoinMap 4.1 (Van Ooijen 2011) was used to construct linkage maps using the regression mapping algorithm.
A two-step approach was used to develop genomic resources and construct linkage maps.
Similar(39)
This is the same concept used in constructing linkage maps or genetic mapping of diseases.
To analyze the distribution of laccase genes in the L. edodes genome, localization was carried out using a previously constructed linkage map of L. edodes (Miyazaki et al. 2008).
JoinMap 3.0 [ 68] was used for constructing linkage maps.
In classical linkage mapping approach, chromosome assignment information is required for all constructed linkage groups.
VS and RB constructed linkage maps, carried out QTL mapping, and performed remaining data analyses.
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