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For the purpose of the along-track pre-processing (detailed hereafter), we construct a provisional datasets where the latitude limit of the selected measurements extends up to |±62°| for low-latitude measurements and down to |±42°| for the polar measurements.
As an example application for our approach, we construct a provisional scaffold model for gene regulation in the early sea urchin embryo based on the Endomesoderm GRN, one of the best studied large developmental GRNs.
Since the detailed cis-regulatory interactions, and thus transcription kinetics, are not available for all genes in the network, we chose to construct a provisional scaffold model including all genes, but using simplified transcription kinetics.
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