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Constraints-based approaches focus on employing data-driven physicochemical and biological constraints to enumerate the set of feasible phenotypic states of a reconstructed biological network in a given condition.
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The epsilon-constraint framework is a general-purpose solution approach for multi-objective optimization; it iteratively solves single-objective versions of the multi-objective problem, with additional so-called epsilon-constraints, in order to enumerate all Pareto-optimal solutions.
Here we employ a hard-sphere plus stereochemical constraint model of dipeptide mimetics to enumerate the side-chain dihedral angles of leucine (Leu) and isoleucine (Ile), and identify those conformations that are sterically allowed versus those that are not as a function of the backbone dihedral angles ϕ and ψ.
We introduce the first polynomial delay algorithm to enumerate all bubbles with length constraints in a weighted directed graph.
A simple solution procedure is to enumerate all possible choices for αk,n that meet constraint (12).
Therefore, to enumerate all possible SSR patterns in all DNA sequences under these two constraints, there are exactly 501 fundamental basic SSR patterns from 1 to 6 nucleotides in length [ 18].
A naive way to arrive at an optimal resource allocation plan is to enumerate all possible resource allocation plans for a given set of applications under given cloud resource constraints.
Despite our use of constraints sets to reduce the set of allowed candidate outputs, in most cases, this space is still too large to enumerate.
He likes to enumerate the elements of power.
The reasons to choose Rubio are easy to enumerate.
The distributions were overlaid to enumerate species richness.
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