Genes that downregulated significantly only in part 1 constituted Cluster three, which included soxP-2, bruli, cip29, rbap48, khd-1, cyclinB, rrm2, smedwi-2, soxP-1, rbbp4-1, setd8-1, sz12-1, and h2b.
46 viruses of subgenotype B4 [ 11] constituted cluster 4, with a bootstrap value of 98%.
Nine genes, composed of two IPTs, one LOG, one CHK and five RRs, constituted Cluster 2 and showed peaks of expression between 1 4 wpf and 11 16 wpf with the highest transcript abundance in the post-veraison peak.
Effects were considered significant at a statistical threshold of p<0.005 (uncorrected) at the voxel level and an extent threshold of 184 contiguously significant voxels to constitute clusters of significant rCBF differences at p<0.05.
Analysis of NF- κB and MAPK pathway models shows that highly compensative parameters constitute clusters consistent with the network topology.
a's clustering is represented by boxes, such that each box constitutes a cluster, and b's clustering by node colors, i.e., subsets of nodes with the same color constitute clusters.
For the purposes of this analysis, mutations within 10 bp were considered "complex mutations" and treated as a single event, thus not constituting clusters unto themselves.
A total of 300 different spoligotype patterns were recognized among the 1298 strains subjected to analysis, of which 201 were unique patterns, and 99 were shared with other isolates, constituting clusters (Additional file 2).
Thus, detailed analysis of the genes re-arranged to code for the scFvs constituting clusters A and B showed that B had a higher diversity than A. This higher diversity of cluster B was also evidenced by the longer branches of the B subtree as compared to A, and this diversity very possibly allowed cluster B to encompass all the best clones.
