Exact(37)
The final alignment included 2,797 amino acids with 278 constant sites and had in total 5.23% missing data.
For analysis with PhyloBayes, constant sites were deleted and the CAT+Γ model of protein evolution with 4 discrete categories for gamma distributed rates was applied [100].
Sequencing of tef1, cal1 and las1 for the whole strain sample provided 1241 nts, of which 1098 were constant sites and 109 polymorphic characters were parsimony-informative (49 in tef1, 38 in las1 and 22 in cal1, respectively).
Additional properties such as the number of gaps and number of constant sites in the different alignments are shown in Table 2. Estimates of potential sequencing errors in Sminthopsis ESTs indicated an error rate of approximately 0.01% and allelic variation of about 0.02%.
We have ν = 0 for constant sites, and ν ≥ 2 for all non-constant sites.
As a consequence of the faster rate with constant sites excluded, the branch lengths of the resulting trees are ~2.6 times longer than when constant sites are included.
Similar(23)
"Const". is the number of constant (invariant) sites, and "Inform" is the number of parsimony informative sites.
After each 5-year cycle the single-tree windthrow probability can be predicted based on the current stand and constant site conditions.
Since then, the street has turned into a constant site for marches and pilgrimages to the large impromptu shrine on the spot where Brown was shot.
In the site's early years, it received only a small amount of fan-submitted material, which has ballooned since and made constant site maintenance a challenge.
It is impossible, however, to specify a constant site, quality, or intensity for in the course of a specialized practice one will encounter all conceivable varieties of head-pain in the context of migraine".
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