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To make fast comparisons in the present work we allow only constant HMM templates, so, where and are the sample mean and standard deviation of the th feature trajectory for sound.
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Deaths from unrelated causes were also excluded as these were assumed to be constant with or without HMM.
One main drawback with the HMM model with constant transition matrix is that the probability for a firm to move from one state to another does not depend on any observable, which is unrealistic for reasons considered in the case of the first model.
Furthermore, the number of HMMs employed remained constant, in contrast to the number of proteins encoded by the genomes, therefore yielding comparable E values.
For all amino acid sequence data sets, PROML was run with three different settings for the R (rate variation among sites) parameter: Gamma distribution [ 187], Hidden Markov Model (HMM [ 188]) and constant rate of change.
A cut-off E-value of 0.01 and a constant sample size of 20,000 were used for profile HMM searches.
(b) Hyperlens: Cylindrical HMM geometry allows for the tangential component of the wavevector times the radius to remain constant.
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"Hmm hmm".
LaDue: "Hmm, hmm".
Merkel: Hmm.
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