The C7AIR is being beta-tested at this time and will be manufactured by Illumina as a consortium array for future use in rice genetics and breeding worldwide.
High-density SNP arrays like the Brassica 60 k SNP Illumina consortium array (Illumina, San Diego, CA, USA) have opened the way for high-resolution QTL analyses based on linkage disequilibrium (LD) in both major and minor crops.
A total of 158 European winter-type B.napus inbred lines were genotyped with 21,623 unique, single-locus single-nucleotide polymorphism (SNP) markers using the Brassica 60 K-SNP Illumina® Infinium consortium array.
Recently developed resources like the Brassica 60 k SNP Illumina® Infinium consortium array and the publication of the Brassica napus genomic sequence [ 20] now allow fine-mapping of genotype-trait associations on a genome-wide scale.
Lentiviral shRNA targeting ATF4 (TRCN0000013573) was obtained from the RNAi Consortium (TRC) arrayed human genome-wide shRNA collection (Sigma).
In this study we used the Brassica 60kSNP Illumina consortium genotyping array to assess the influence of selection and breeding for important agronomic traits on LD and haplotype structure in a diverse panel of 203 Chinese semi-winter rapeseed (Brassica napus) breeding lines.
The data was generated by the Hippocampus Consortium on M430 arrays using hippocampus tissue and analyzed using the RMA method.
Array CGH was performed using a custom 180 k oligonucleotide-based microarray with an International Standards for Cytogenomic Arrays Consortium V1 Clinical Design complying with the human genome build GRCh37/hg19 (Illumina).
This array includes the entire 4 × 180 K ISCA International Standard Cytogenomic Arrayy) design which has a strong clinical emphasis and covers 9269 polymorphic regions derived from the Wellcome Trust case control consortium CNV genotyping array, mainly based on the 42 M array data.
Through contact with the designer of the Institute for Translational Medicine and Therapeutics (ITMAT Broad Institute CARee consortium (IBC) CardioChip array (B J Keating, 24 coauthor), we contacted all population based studies genotyped on this array.
For the current analysis, the subjects in the Neuropathology Consortium and the Array Collection were divided into two groups.
