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Each orthologous set consists of the reference sequence (proximity of 0.80) and four equally distant orthologs.
The input for Pindel consists of the reference genome sequence and a file of one-end-mapped read pairs.
This information consists of the reference set of solutions they have found so far; it depends on the best solution found, the shape of the solution space, and the settings of each algorithm.
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A BAM format alignment file consisting of the reference transcripts and the mapped J5 and SC Illumina reads was visualised in the IGV (v2.0.34 [ 29]) alignment viewer window.
The genomic assemblies available for 41 S. cerevisiae strains were sampled: these consisted of the reference strain S288c and a set of 40 additional strains covering a broad range of ecological and geographical origins (Table 1).
The constraint tree consists of the bifurcating reference tree and a polytomy comprising the query sequences attached to the reference tree branch under consideration.
When the mistakes have been corrected on the proofing copy, an operator prepares another, much shorter correction tape, which consists of the corrections preceded by the reference to the line on which they occur.
Each reference consists of the DOI of the ActivePaper file that contains the data plus the HDF5 path that identifies the dataset inside the file.
This consists of the page's text, plus references to any graphics (or sound or film clips) associated with it.
We created a database, consisting of the project reference ID on the server, and the material to be assigned for specific IFC classes (Fig. 8).
The 688 gene triplets identified above, consisting of the human reference sequence, the highest similarity homolog and the synteny homolog, constitute a reliable test set representing potential asymmetrical evolution events.
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