Sentence examples for consists of alignments from inspiring English sources

To evaluate the performance of RNAstrand on alignments which have not been identified as structured RNA by RNAz, we constructed a second test set which only consists of alignments not classified as structured RNA by RNAz in both reading directions.

It is from dataset that we create the four optimized datasets as summarized in Table 2 and Figure 2. The first dataset, D s, consists of alignments with a single individual sampled per species at each locus (not necessarily the same individual across loci).

MAP-RSeq consists of alignment with tophat 2.0.6 (Kim et al., 2013, p.2) against the hg19 genome build and gene counts with the htseq software 0.5.3p9 (http://www.huber.embl.de/users/anders/HTSeq/doc/overview.html) using gene annotation files obtained from Illumina (http://cufflinks.cbcb.umd.edu/igenomes.html).html

BAM files, binary versions of Sequence Alignment/Map (SAM) format files, consist of alignments of DNA reads (generally short) to a reference sequence, usually a complete genome.

Up to this stage, the alignment consists of aligned representatives of NCIV clusters.

The features used by the RAF program, as evaluated in this article, consist of alignment features, and pairing features,.

Real gene alignment protocol consists of strict alignment (Bowtie, no mismatches, single alignment location) to the human genome (hg18, NCBI Build 36.1).

Pseudogene alignment protocol consists of strict alignment (Bowtie, no mismatches, report reads with only one alignment location only) to the composite genome.

The Global Match File (see additional files 1 and 2) consists of 269,474 alignments (see methods for further details).

Spial's output consists of coloured alignments as described above, of sequence logos (Crooks et al., 2004; Schneider and Stephens, 1990), and of coloured protein structures (Fig. 1).

Our new pipeline consists of multiple alignments that incorporate all known genetic variants into a genomic model followed by annotation and merging.