We evaluate the performance of TIGRESS and other GRN inference methods on nine benchmark datasets, each consisting of a compendium of gene expression data, optionally a list of known TF, and a gold standard set of verified interactions which we ideally would like to recover from the expression data only.
It consists of three modules, a previous day activity recall, a compendium of child-specific energy costs, and an analytical module.
The sequence compendium consists of 9 aligned fasta files, one for each of HIV-1's proteins.
Because RMT ensures only highly significant interactions are kept, the GIL compendium consists of 558,022 unique high quality A. thaliana co-expression relationships across almost all of the measurable genes on the ATH1 array.
The Sarvāstivādin Abhidharma-piṭaka consists of the Saṅgītiparyāya (Discourse on the Collective Recitation), the Dharmaskandha (Compendium of Dharmas), the Prajñaptiśāstra (Manual of Concepts), the Vijñānakāya (Compendium of Consciousness), the Dhātukāya (Compendium of Elements), the Prakaraṇapāda (Literary Exposition), and the Jñānaprasthāna (The Foundation of Knowledge).
The dedicated database consists in a large compendium of public data (more than 500 data sets) related to muscle (skeletal and heart).
It (The Republican economic platform) just struck me as sort of a compendium of modest expectations.
"But...it just struck me as sort of a compendium of modest expectations.
Recently, Pagliarini et al. [3]undertook a systematic identification of mitochondrially localized proteins using a combination of mass spectrometry, GFP tagging, and computational methods to create a protein compendium consisting of 1098 mitochondrial mammalian proteins.
A large multi data set compendium consisting of 165 diverse data sets (see Additional file 3: Table S3) was used to generate an accurate representation of gene expression.
