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The prostate data set contains prostate tumors and normal prostate samples, each consisting of the expression levels of 12600 genes.
For simple systems, consisting of the expression of 1 2 genes, the stochasticity has been characterized as 'intrinsic noise' [ 1, 2].
Let Ω f be a set consisting of the expression vectors of genes known to be controlled by a single regulator f.
In addition, we investigated the generic behavior of a biomolecular reaction network consisting of the expression of two genes in a cell-free transcription-translation system enclosed in a artificial reaction vessel.
More recently, Sellares et al. developed a molecular score for antibody-mediated rejection in kidney grafts consisting of the expression values of 30 specific genes, which significantly predicted future graft failure [ 11].
NCA models TF regulation of gene expression by the matrix equation [ 26, 27]: (1) log G m × n = CS m × p × log TFA p × n Here, [ G] m × n is a matrix representing an experimental gene expression dataset consisting of the expression of m genes across n conditions; [ log G] m × n is its log-transformed version.
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The microarrays consist of the expression data for the tissues associated with colon, blood, lung, breast, prostate, and cancer of the central nervous system.
The data consisted of the expression values of 122 transcriptional targets of p53 in different cellular conditions, which led either to proliferation or to growth arrest.
Each expression profile consists of the expression levels of some of the nodes in the network in one individual (some genes may not have expression data, e.g., because they were absent from the microarray).
We downloaded the normalized miRNA expression data directly and these profiles consist of the expression information of 556 miRNAs.
In this study, each feature vector consisted of the expression intensity of a gene across all the samples in the normal group or the CML group, respectively.
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