Other ML trees with no significant support are consistent with this branching pattern as well (Supplementary Figs. S25, S28, S33 38, S39, S40, S59, S72, S112, S120, S122 123).
In consistent with this, they branch as sister taxa in our tree, and importantly, F. pringlei from both HHU and 1KP Consortium were sister taxa in the tree based on individual Flaveria samples (Additional file 2).
The analysis generated 15 different branch patterns, five of which were consistent with the branch pattern of the global core set.
Consistent with the branching topology, the distribution of maximum env pairwise distances suggested transmission of multiple viral variants in five subjects, A, OG, OW, PP, and PK.
For Hylobates species, we found that the divergence time estimates were fairly consistent with the branching patterns of the species tree: (((H. agilis, H. muelleri, H. moloch, H. klossii), H. lar), H. pileatus).
Consistent with this, the products of branch migration through the 84 bp (full length strands) appeared earlier than the extensively digested products in the time course reactions (Fig. 6).
As GLABRA1-like MYB genes have been hypothesised to have been acquired in rosids after the rosid-asterids division [ 41, 42], the absence of BvMYBs in this clade is consistent with this hypothesis, since Caryophyllales branched off before the separation of asterids and rosids.
The hix DNA segments cross the enhancer to form 2 nodes, consistent with a branch on negatively supercoiled DNA.
Consistent with this pattern, site models and branch-site models in which a class of positively selected codon positions is allowed (M8 and MA with omega estimated) were significantly better than neutral models (M7 and MA with omega fixed to 1) for Regions 1 and 2 of ago-1, but not for Region 3 of ago-1 nor for dcr-1.
Intracellularly filled neurons in our electroporated hemispheres showed dendritic changes (i.e., increased branching and elongation) consistent with this effect.
