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These were then grouped into clusters of read pairs that were consistent with the same rearrangement junction: a minimum of two consistent reads were required.
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Amazon SimpleDB supports two read consistency options: eventually consistent read and consistent read.
An eventually consistent read might not reflect the results of a recently completed write.
For example, the master slave asynchronous replication model cannot provide consistent read requests from slaves.
They simply send write requests (and eventually consistent read requests) to a DynamoDB endpoint in any specified region.
Contigs were extended or joined based on consistent read mappings with their mates.
To quantify the abundance of each large repeat arrangement, the number of consistent read pairs that spanned each large repeat in at least one conformation was counted.
To examine the stoichiometric equality of these alternative repeat arrangements, we compared the number of consistent read pairs from the 35 kb library that span each repeat (table 3, "All" column).
This method, named SPIA, produces continuous linear synthesis of ssDNA amplicons from a single RNA template, producing consistent read numbers through the transcriptome and minimizing internal mis-priming that could generate false 3'ends during the cDNA library preparation [ 37].
Newbler first assembles sets of self-consistent reads into contigs, which are the rough equivalent of exons.
The least-consistent read group was broken into sub-partitions exactly once in this way: further iteration risks overfitting and is not guaranteed to converge to a meaningful result.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com