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An approach for the 2D depiction of protein-ligand complex series with an automatically generated consistent layout of the residues for all diagrams was introduced in the software MOE [2] in 2007.
We developed a new approach, which automatically generates a consistent layout of interacting residues for a given series of complexes.
We worked together to pick a consistent layout each team member would follow, and then we divided the work of finding images, and creating visualizations.
In case of flexible side chains and different possible protonation states a compromise between a consistent layout and flexibility in order to avoid collisions is necessary.
The most consistent layout for scrolling is the row layout.
Use a consistent layout, but whatever you do, avoid overloading your slides and use a lot of blank space to avoid visual fatigue.
Similar(48)
The automatic generation of such consistent layouts offers the possibility to apply it to large data sets originating from computer-aided drug design methods.
" It generates potentially all possible consistent layouts, organizing them as paths in a "double-tree" structure, rooted at a randomly selected "seed" read.
At a high level, SUTTA's framework views the assembly problem simply as that of constrained optimization: it relies on a rather simple and easily verifiable definition of feasible solutions as "consistent layouts.
The consistent, clean layout, large type and bold summaries make it an enjoyable read.
As intended, the comparability and legibility within a complex series was considerably improved due to the consistent residue layout.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com