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However, for the purpose of map alignment/integration, the consistency of order among common markers between individual maps appeared to be more important than simply the number of shared loci.
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After checking for the consistency of point order [20], the operator exported the point coordinates (XYZ) as a.txt file.
It can be concluded that the internal consistency (of the order of ± 10%) of the calibration for all the IR2 filters has been confirmed observationally.
Phylogenetic trees were generated, and the consistency of branching order was evaluated using SEQBOOT, DNADIST, NEIGHBOR, and CONSENSE modules of the Phylogeny Inference Package (V3.52c).
We also tested for consistency of exon order and orientation to identify potential mis-assemblies.
To evaluate the quality of the consensus linkage map, we assessed the consistency of locus order between the consensus map and the component maps.
The consistency of marker order and the limited map expansion observed made comparative mapping of the P2 and OxG crosses relatively simple.
We manually examined the consistency of the order of the markers along each BAC contig and along the genetic map and edited problematic contigs.
In these cases it was difficult to judge the overall consistency of marker order among maps, as reported by correlation coefficients.
In such co-citations improvements in annotation consistency of the order of 20% are observed for several organism categories (Table 1 and Figure 2c and d), confirming that divergent organism assignments contribute significantly to the observed differences.
Three chromosomes (BTA 19, 28 and 29) cannot be assessed for consistency of their order between the ILTX 2005 and BovGen RH map because they have no markers in common.
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