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The microarrays consist of the expression data for the tissues associated with colon, blood, lung, breast, prostate, and cancer of the central nervous system.
We downloaded the normalized miRNA expression data directly and these profiles consist of the expression information of 556 miRNAs.
The data consist of the expression levels of 120 genes (X) and the concentrations of 21 fatty acids (Y), both spanning a total of 40 observations of several genotypes and diets.
Many co-expression studies use the absolute value of the Pearson correlation as an unsigned co-expression similarity measure, (1) where gene expression profiles x i and x j consist of the expression of genes i and j across multiple microarray samples.
In short, we constructed a signed network by calculating the Pearson's correlations for all pairs of genes and the signed similarity (Sij) matrix derived from Sij = (1 + cor xi,xj))/2, where gene expression profiles xi and xj consist of the expression of genes i and j across multiple microarray samples.
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The data consisted of the expression values of 122 transcriptional targets of p53 in different cellular conditions, which led either to proliferation or to growth arrest.
Each expression profile consists of the expression levels of some of the nodes in the network in one individual (some genes may not have expression data, e.g., because they were absent from the microarray).
For simple systems, consisting of the expression of 1 2 genes, the stochasticity has been characterized as 'intrinsic noise' [ 1, 2].
The prostate data set contains prostate tumors and normal prostate samples, each consisting of the expression levels of 12600 genes.
In this study, each feature vector consisted of the expression intensity of a gene across all the samples in the normal group or the CML group, respectively.
Let Ω f be a set consisting of the expression vectors of genes known to be controlled by a single regulator f.
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