Exact(7)
Our goal was to build a Ste20p substrate predictor that considers sequence features of phosphorylation site and distal sites.
To explore the effects of the two new terms on the improvement of fold recognition, the FR-t5 method is compared with the method FR-t3 that only considers sequence profile, predicted secondary structure and hydrophobic scoring.
PETcofold considers sequence conservation, but its full power is only revealed when the input data contains structural covariance.
It considers sequence weighting, position dependant gap penalties, and the automatic switching among scoring matrices based on the degree of similarity among the input sequences.
We also describe ConsWin, a heuristic that considers sequence conservation of neighboring amino acids, and demonstrate that it improves the performance of all methods tested on our large dataset of enzyme SDPs.
Diseases that have little correlation with the interaction network call for higher quality networks or an integrative approach that considers sequence, functional annotations, expression data or other additional information.
Similar(53)
The following analysis only considers sequences with a length greater than 500 bp (see project HCNC).
Now we consider sequence ; notice that (3.29).
Example: Let us consider sequence A={1,2,3} and set B={4,5}.
In the considered sequence, the number of S blocks is, while.
For all considered sequence distance measures we observed the following pattern among the V3 loop sequences.
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