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Finally we describe a nucleotide composition profile showing a peak in GC bias within a narrow window (~200 bp) around the EREs; we note that this effect is uncoupled from CpG islands as for t>16 only 5%6666 sites) of the sites considered overlap with CpG islands (10% for t>10) and the GC bias is unchanged if these are removed.
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Overlapping genes were discovered (Barrell et al. 1976); such genes were considered "overlapping" because two different amino acid chains might be read from the same stretch of nucleic acids by starting from different points on the DNA sequence.
The second trial considered overlaps in the two insurers' business selling health benefits to individuals, and administering Medicare Advantage coverage to the elderly.
The agencies considered overlapping sets of clinical comparators and trials when evaluating the same drug.
Two SPs were considered overlapping if their size was <0.03 apart.
A piRNA was considered overlapping with an ME if its mapping position is entirely within an ME.
A contig and gene were considered overlapping if they shared an overlap which was longer than 50% of the gene length.
A small RNA was considered overlapping, or associated with a repeat, if at least one base pair overlapped with a repeat.
Lists of peaks were intersected with the condensed list of origins with the GFF-overlap feature of the ChIP-seq Tool Set (http://havoc.genomecenter.ucdavis.edu/cgi-bin/chipseq.cgi), with peaks ≤200 bp apart considered overlapping.
To provide a co-occurrence criterion for inclusion of genes in the imprinted-candidate pool, genomic features (promoters, CpG islands, histone modification peaks) were considered overlapping if they shared one or more bases in common.
Huang et al. performed a similar study, but also considered overlapping proteins between the pathways and integrated transcriptomics data at the protein level by counting only interactions between proteins encoded by differentially expressed genes.
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