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A gene was considered expressed if its average expression level was greater than five-fold more than the nonmatching probes.
Genes considered expressed ("ON") and non-expressed ("OFF") were those that were found in the top 2 quartiles of ranked genes and the bottom quartile of ranked genes respectively.
A gene is considered expressed if the detected expression level is above a certain threshold.
A gene was considered expressed if its mRNA expression levels were >1 RPKM (Reads Per Kilobase per Million mapped reads).
Repressed genes were considered those with an expression value of <31, while genes with expression values >75 were considered expressed or 'on'on
Only genes with expression data from at least three replicate samples were considered expressed and used for subsequent differential expression analysis.
On the basis of the expression value, a gene is considered expressed or not in any given experiment.
The results from each study were generally comparable, but in cases where one suggested early expression and the other did not the gene was considered expressed for our analysis.
As before, a lncRNA was considered expressed if at least two samples within the cell line group had expression >0.1.
T-UCRs were considered expressed if their mean probe value was above the array background (median expression of the array).
On the other hand both, structural and nonstructural damage is considered, expressed by the modified Park/Ang overall structural damage index (OSDI), the maximum interstory drift (ISD) and the maximum floor acceleration.
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