Exact(1)
Hardy-Weinberg equilibrium in the control group of each study was assessed using the chi-square test, while P < 0.05 was considered disequilibrium.
Similar(58)
This is totally distinct from Nash equilibrium where both players watching different programs is considered as disequilibrium in which they feel regret and want to change their strategies.
The functional analysis implemented in our web server for SNPs in trait-associated pathways considers linkage disequilibrium (LD) information, three categories of features (coding, non-coding and eQTLs) and enrichment analysis, which is a very comprehensive tool/module in comparison to available web-based tools for functional analysis (Table S6).
Haplotype blocks were selected with Haploview software by considering linkage disequilibrium (LD) blocks.
In addition, in order to increase reliability of a tree, the pipeline has steps such as removing low quality data and considering linkage disequilibrium.
Although we do not explicitly consider linkage disequilibrium, the l0 sparsity constraint of SConES should enforce that when several correlated SNPs are associated with a phenotype, a single one of them is picked.
The researchers on the project noted that when considering linkage disequilibrium (LD), there are approximately one million independent loci in the human genome (α = 5 × 10−8 is the Bonferonni-corrected threshold for a million tests).
A set of five permutations, consistent across all tests to consider linkage disequilibrium structure between SNPs, was applied to the distance residuals and the spearman correlation test was applied as before to estimate the distribution of the test statistic under the complete null hypothesis of no variance effects.
It is classically considered that such disequilibrium would be lethal for mammalian cells.
If the study was found not to be in HWE with P value less than 0.05, it was considered to be disequilibrium.
When six populations were considered, significant linkage disequilibrium was observed only for population 3 within cluster B, but not for the other five populations.
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