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A gene was considered differentially expressed if the moderated t-test resulted in a corrected p-value <0.01.
We conclude that disorders and drugs affecting the indoleamines must be considered differentially in the auditory and the visual system.
Signals were considered differentially detected if p<0.01.
Genes were considered differentially expressed when p-values were <0.05.
Only proteins with spot volumes consistently different in all replicate gels were considered differentially expressed.
Those genes with an FDR ≥13 and a log2 ratio >0.65 were considered differentially transcribed.
Genes with a FC more than a 50% compared to controls were considered differentially expressed.
Transcripts are considered differentially expressed when the average change was 2 fold or more.
CpG sites were considered differentially methylated when their P value was less than 0.001.
The techniques disagreed for 1,686 (3.8%) probesets, 809 of which were considered differentially expressed by Messina alone, and 877 of which were only considered differentially expressed by limma.
Gene sets with a FDR less than 0.25 and a p-value less than 0.05 were considered differentially expressed.
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CEO of Professional Science Editing for Scientists @ prosciediting.com