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The daily newspaper Shargh (Orient), which is considered aligned to reformist forces, ran a front-page photo of angry students punching the air and beating the window of the car containing President Hassan Rouhani on his return from the United States.
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And, wrote the daily newspaper Arman, which is considered aligned with former President Hashemi Rafsanjani: "Do not hastily judge the results of the trip to New York".
We considered aligned matches from either a 5'- or 3'-RACE sequence as confirmation that a particular transcript was expressed.
Intuitively, we considered aligning the 'backbone', or 'mid-line', of a curved fruit fly LNS or an adult VNC (red skeletons in Fig. 1).
Approximately 50% of the neurite segments are considered completely aligned to the pattern direction with an alignment angle of 10° or less and a full 72% of the neurite segment population is within the 20° angle population, indicating significant alignment to pattern features.
However, matched-pairs tests (such as Stuart's test [ 30]) are comparatively efficient, particularly because of their ability to consider aligned sequences on a site-by-site basis [ 24].
The results were then filtered using homemade perl scripts, and a BAC clone was considered as aligned to the genome sequence only if both paired ends matched at a distance less than 300 kbp and with a consistent orientation [1, Supplementary data].
However, instead of considering each read as an initial cluster, we assemble reads into long contigs (> 500 bp) and consider reads aligned to the same contig (> 95% matches) as the initial cluster.
In this manuscript, we consider aligned pairs of putatively orthologous protein-coding sequences across a variety of species.
As a conservative pruning procedure, we only consider aligned node pairs which appear in more than half the runs (for comparison, under random matching a given alignment partner appears with probability 1/ N ~ 0.03).
Many of these groups have values that Conservatives consider closely aligned to their own.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com