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To elucidate key biological processes, rather than conserved particular molecular functions, the GO sub-ontology 'biological process' (GO-BP) was used for the gene-set enrichment analysis [ 87].
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Another is Kgalagadi Transfrontier Park, which links South Africa's Kalahari Gemsbok National Park with Botswana's Gemsbok National Park; it conserves a tract of arid country with such associated types of antelope as springbok and gemsbok; smaller reserves and parks conserve particular species.
For instance, an ecologist employed by State Forestry and tasked with conserving ecologically important riverine nature may exhibit a unit level scale preference (i.e. focus on conserving particular stands of alluvial forest).
These positions were then screened to identify positions that, having mutated, conserved the particular mutation in all future progeny.
The calcium rise profile was conserved; in particular, no sustained calcium increase occurred in the presence of anti-LFA-1 on the particle.
Both HMMER3 and PSI-BLAST [34] overcome this weakness by weighting mismatch penalties on the likelihood of a match for a given region (i.e. how conserved a particular region of the gene is).
The difference between orphan and non-orphan QIPP scores suggests that it might be possible to predict a priori how conserved a particular CDS might be using QIPP scores in the absence of homology.
As expected, repeat A was well conserved, in particular within the CG-rich core sequences (Additional file 2: Figure S2B).
Members of the OAS family were also highly conserved, in particular OAS1 which shared 87% amino acid identity with the dog OAS1 sequence.
From the sequence alignment, other amino acids were widely conserved, in particular charged and other polar residues in the amphipathic TMDs II, V and VI.
Thus, existing ORFs may become functionalized in another frame, whereas the original protein function is still conserved, in particular in some ant species.
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