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Sequence regions with precisely matched known phosphomotifs were then identified from all of the species, and species conservation was evaluated with respect to known and potential phosphorylation sites.
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The level of conservation in the alignment was evaluated with the computational algorithm Gumby [ 32] that makes minimal assumptions about the statistical features of conserved noncoding regions and treating the sequence alignment as its own training set.
Amino acid conservation for a novel missense mutation was evaluated with the Conseq program (http://conseq.tau.ac.il/).
The medieval Traba bridge (NW Spain) was evaluated with GPR to analyze its state of conservation from a historical, archaeological and structural points of view.
Heterogeneity was evaluated with Chi-square test.
All HS and non HS sites in hg17 were evaluated with respect to their phastCons conservation designation.
The numerical schemes are evaluated with several standard shallow-water test cases that emphasize accuracy and conservation properties.
Pedigree relationships were evaluated with KINGROUP v2.0.8.
Period differences were evaluated with t-test.
Conservation score: sequence conservation score for each alignment position was evaluated consulting a standard 20 × 20 substitution matrix (Johnson and Overington, 1993).
The cross species conservation of the nonsynonymous SNPs was evaluated using the UCSC genome browser.
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